Package: joint.Cox 3.16
joint.Cox: Joint Frailty-Copula Models for Tumour Progression and Death in Meta-Analysis
Fit survival data and perform dynamic prediction under joint frailty-copula models for tumour progression and death. Likelihood-based methods are employed for estimating model parameters, where the baseline hazard functions are modeled by the cubic M-spline or the Weibull model. The methods are applicable for meta-analytic data containing individual-patient information from several studies. Survival outcomes need information on both terminal event time (e.g., time-to-death) and non-terminal event time (e.g., time-to-tumour progression). Methodologies were published in Emura et al. (2017) <doi:10.1177/0962280215604510>, Emura et al. (2018) <doi:10.1177/0962280216688032>, Emura et al. (2020) <doi:10.1177/0962280219892295>, Shinohara et al. (2020) <doi:10.1080/03610918.2020.1855449>, Wu et al. (2020) <doi:10.1007/s00180-020-00977-1>, and Emura et al. (2021) <doi:10.1177/09622802211046390>. See also the book of Emura et al. (2019) <doi:10.1007/978-981-13-3516-7>. Survival data from ovarian cancer patients are also available.
Authors:
joint.Cox_3.16.tar.gz
joint.Cox_3.16.zip(r-4.7)joint.Cox_3.16.zip(r-4.6)joint.Cox_3.16.zip(r-4.5)
joint.Cox_3.16.tgz(r-4.6-any)joint.Cox_3.16.tgz(r-4.5-any)
joint.Cox_3.16.tar.gz(r-4.7-any)joint.Cox_3.16.tar.gz(r-4.6-any)
joint.Cox_3.16.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
joint.Cox/json (API)
| # Install 'joint.Cox' in R: |
| install.packages('joint.Cox', repos = c('https://takeshiemura1.r-universe.dev', 'https://cloud.r-project.org')) |
- dataOvarian - Survival data of 1003 ovarian cancer patients from 4 independent studies.
- dataOvarian1 - Data on time-to-recurrence and 158 gene expressions for 912 ovarian cancer patients from 4 independent studies.
- dataOvarian2 - Data on time-to-death and 128 gene expressions for 912 ovarian cancer patients from 4 independent studies.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:8b924e04d6. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 129 | ||
| source / vignettes | OK | 210 | ||
| linux-release-x86_64 | OK | 141 | ||
| macos-release-arm64 | OK | 119 | ||
| macos-oldrel-arm64 | OK | 96 | ||
| windows-devel | OK | 201 | ||
| windows-release | OK | 81 | ||
| windows-oldrel | OK | 127 | ||
| wasm-release | OK | 109 |
Exports:cmprskCox.regcondCox.regF.KMF.predictionF.windowF.window.WeibullF.windowsF.windows.WeibullI.splinejointCox.indep.regjointCox.regjointCox.Weibull.regM.splinesplineCox.regWeibull.simu
